IL_4V6R_180

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

AUGAAGAAGGC*GUUGUAAAGU

Length

21 nucleotides

Bulged bases

4V6R|1|AA|A|412

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6R|1|AA|A|408
4V6R|1|AA|U|409
4V6R|1|AA|G|410
4V6R|1|AA|A|411
4V6R|1|AA|A|412
4V6R|1|AA|G|413
4V6R|1|AA|A|414
4V6R|1|AA|A|415
4V6R|1|AA|G|416
4V6R|1|AA|G|417
4V6R|1|AA|C|418
*
4V6R|1|AA|G|425
4V6R|1|AA|U|426
4V6R|1|AA|U|427
4V6R|1|AA|G|428
4V6R|1|AA|U|429
4V6R|1|AA|A|430
4V6R|1|AA|A|431
4V6R|1|AA|A|432
4V6R|1|AA|G|433
4V6R|1|AA|U|434

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S4