IL_4V6R_193

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UUAAGUGGGAAAC*GGAAGAUGUAACGGGGCUAAA

Length

34 nucleotides

Bulged bases

4V6R|1|BB|A|1127, 4V6R|1|BB|U|1130

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6R|1|BB|U|1018
4V6R|1|BB|U|1019
4V6R|1|BB|A|1020
4V6R|1|BB|A|1021
4V6R|1|BB|G|1022
4V6R|1|BB|U|1023
4V6R|1|BB|G|1024
4V6R|1|BB|G|1025
4V6R|1|BB|G|1026
4V6R|1|BB|A|1027
4V6R|1|BB|A|1028
4V6R|1|BB|A|1029
4V6R|1|BB|C|1030
*
4V6R|1|BB|G|1124
4V6R|1|BB|G|1125
4V6R|1|BB|A|1126
4V6R|1|BB|A|1127
4V6R|1|BB|G|1128
4V6R|1|BB|A|1129
4V6R|1|BB|U|1130
4V6R|1|BB|G|1131
4V6R|1|BB|U|1132
4V6R|1|BB|A|1133
4V6R|1|BB|A|1134
4V6R|1|BB|C|1135
4V6R|1|BB|G|1136
4V6R|1|BB|G|1137
4V6R|1|BB|G|1138
4V6R|1|BB|G|1139
4V6R|1|BB|C|1140
4V6R|1|BB|U|1141
4V6R|1|BB|A|1142
4V6R|1|BB|A|1143
4V6R|1|BB|A|1144

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L36

Chain BE

50S ribosomal protein L3

Chain BH

50S ribosomal protein L6

Chain BL

50S ribosomal protein L13

Chain BO

50S ribosomal protein L16