IL_4V6S_014

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

4V6S|1|AB|G|277

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_014 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4568

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V6S|1|AB|C|274
4V6S|1|AB|C|275
4V6S|1|AB|U|276
4V6S|1|AB|G|277
4V6S|1|AB|A|278
4V6S|1|AB|A|279
4V6S|1|AB|U|280
4V6S|1|AB|C|281
*
4V6S|1|AB|G|359
4V6S|1|AB|U|360
4V6S|1|AB|G|361
4V6S|1|AB|A|362
4V6S|1|AB|G|363

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains