IL_4V6S_024

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

4V6S|1|AB|G|776, 4V6S|1|AB|A|788

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_024 not in the Motif Atlas

Geometric match to IL_7RQB_023

Geometric discrepancy: 0.2875

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6S|1|AB|G|775
4V6S|1|AB|G|776
4V6S|1|AB|G|777
*
4V6S|1|AB|C|787
4V6S|1|AB|A|788
4V6S|1|AB|A|789
4V6S|1|AB|U|790
4V6S|1|AB|C|791

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L34

Chain AD

50S ribosomal protein L2