IL_4V6S_045

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

4V6S|1|AB|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_045 not in the Motif Atlas

Geometric match to IL_7A0S_085

Geometric discrepancy: 0.2593

The information below is about IL_7A0S_085

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

4V6S|1|AB|G|1087
4V6S|1|AB|A|1088
4V6S|1|AB|A|1089
4V6S|1|AB|A|1090
*
4V6S|1|AB|U|1101
4V6S|1|AB|C|1102

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L36

Chain AH

50S ribosomal protein L6

Chain AK

50S ribosomal protein L11