IL_4V6S_088

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

4V6S|1|AB|U|2203

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_088 not in the Motif Atlas

Homologous match to IL_4WF9_125

Geometric discrepancy: 0.5639

The information below is about IL_4WF9_125

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

4V6S|1|AB|U|2202
4V6S|1|AB|U|2203
4V6S|1|AB|G|2204
*
4V6S|1|AB|U|2220
4V6S|1|AB|G|2221

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain AI

50S ribosomal protein L9

Chain AZ

50S ribosomal protein L28