IL_4V6S_128

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_128 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.4054

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V6S|1|BA|G|446
4V6S|1|BA|G|447
4V6S|1|BA|A|448
4V6S|1|BA|G|449
4V6S|1|BA|G|450
*
4V6S|1|BA|C|483
4V6S|1|BA|G|484
4V6S|1|BA|U|485
4V6S|1|BA|U|486
4V6S|1|BA|A|487
4V6S|1|BA|C|488

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BF

30S ribosomal protein S4

Chain BR

30S ribosomal protein S16