IL_4V6S_136

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

UAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_136 not in the Motif Atlas

Homologous match to IL_5J7L_028

Geometric discrepancy: 0.1637

The information below is about IL_5J7L_028

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

4V6S|1|BA|U|594
4V6S|1|BA|A|595
4V6S|1|BA|A|596
*
4V6S|1|BA|U|644
4V6S|1|BA|G|645

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BJ

30S ribosomal protein S8

Chain BS

30S ribosomal protein S17