IL_4V6S_144

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GCG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCG,CGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_144 not in the Motif Atlas

Geometric match to IL_6IA2_005

Geometric discrepancy: 0.2966

The information below is about IL_6IA2_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V6S|1|BA|G|769
4V6S|1|BA|C|770
4V6S|1|BA|G|771
*
4V6S|1|BA|C|808
4V6S|1|BA|G|809
4V6S|1|BA|C|810

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain BQ

30S ribosomal protein S15