IL_4V6S_154

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GUGCUGCAU*AUG(2MG)CC

Length

15 nucleotides

Bulged bases

4V6S|1|BA|U|1049, 4V6S|1|BA|C|1054

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6S|1|BA|G|1048
4V6S|1|BA|U|1049
4V6S|1|BA|G|1050
4V6S|1|BA|C|1051
4V6S|1|BA|U|1052
4V6S|1|BA|G|1053
4V6S|1|BA|C|1054
4V6S|1|BA|A|1055
4V6S|1|BA|U|1056
*
4V6S|1|BA|A|1204
4V6S|1|BA|U|1205
4V6S|1|BA|G|1206
4V6S|1|BA|2MG|1207
4V6S|1|BA|C|1208
4V6S|1|BA|C|1209

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

mRNA

Chain BE

30S ribosomal protein S3

Chain BL

30S ribosomal protein S10

Chain BP

30S ribosomal protein S14