IL_4V6S_156

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

4V6S|1|BA|A|1196

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_156 not in the Motif Atlas

Homologous match to IL_5J7L_049

Geometric discrepancy: 0.5118

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

4V6S|1|BA|U|1060
4V6S|1|BA|G|1061
*
4V6S|1|BA|C|1195
4V6S|1|BA|A|1196
4V6S|1|BA|A|1197

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

mRNA

Chain BE

30S ribosomal protein S3

Chain BG

30S ribosomal protein S5

Chain BL

30S ribosomal protein S10

Chain BP

30S ribosomal protein S14