IL_4V6S_157
3D structure
- PDB id
- 4V6S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.1 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6S_157 not in the Motif Atlas
- Geometric match to IL_6CZR_171
- Geometric discrepancy: 0.3718
- The information below is about IL_6CZR_171
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 183
Unit IDs
4V6S|1|BA|G|1061
4V6S|1|BA|U|1062
4V6S|1|BA|C|1063
*
4V6S|1|BA|G|1193
4V6S|1|BA|U|1194
4V6S|1|BA|C|1195
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BB
- mRNA
- Chain BE
- 30S ribosomal protein S3
- Chain BG
- 30S ribosomal protein S5
- Chain BK
- 30S ribosomal protein S9
- Chain BL
- 30S ribosomal protein S10
- Chain BP
- 30S ribosomal protein S14
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