IL_4V6S_189

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GGAGGCUUUGAAGUGUG*UGCAUGGAGCCGACCUUGAAAUAC

Length

41 nucleotides

Bulged bases

4V6S|1|AB|C|2129, 4V6S|1|AB|U|2130, 4V6S|1|AB|U|2131, 4V6S|1|AB|G|2157

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6S|1|AB|G|2124
4V6S|1|AB|G|2125
4V6S|1|AB|A|2126
4V6S|1|AB|G|2127
4V6S|1|AB|G|2128
4V6S|1|AB|C|2129
4V6S|1|AB|U|2130
4V6S|1|AB|U|2131
4V6S|1|AB|U|2132
4V6S|1|AB|G|2133
4V6S|1|AB|A|2134
4V6S|1|AB|A|2135
4V6S|1|AB|G|2136
4V6S|1|AB|U|2137
4V6S|1|AB|G|2138
4V6S|1|AB|U|2139
4V6S|1|AB|G|2140
*
4V6S|1|AB|U|2151
4V6S|1|AB|G|2152
4V6S|1|AB|C|2153
4V6S|1|AB|A|2154
4V6S|1|AB|U|2155
4V6S|1|AB|G|2156
4V6S|1|AB|G|2157
4V6S|1|AB|A|2158
4V6S|1|AB|G|2159
4V6S|1|AB|C|2160
4V6S|1|AB|C|2161
4V6S|1|AB|G|2162
4V6S|1|AB|A|2163
4V6S|1|AB|C|2164
4V6S|1|AB|C|2165
4V6S|1|AB|U|2166
4V6S|1|AB|U|2167
4V6S|1|AB|G|2168
4V6S|1|AB|A|2169
4V6S|1|AB|A|2170
4V6S|1|AB|A|2171
4V6S|1|AB|U|2172
4V6S|1|AB|A|2173
4V6S|1|AB|C|2174

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L1

Chain BM

30S ribosomal protein S11