IL_4V6S_191

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

(PSU)GAUA*UGUUUG

Length

11 nucleotides

Bulged bases

4V6S|1|AB|U|2491

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6S|1|AB|PSU|2457
4V6S|1|AB|G|2458
4V6S|1|AB|A|2459
4V6S|1|AB|U|2460
4V6S|1|AB|A|2461
*
4V6S|1|AB|U|2489
4V6S|1|AB|G|2490
4V6S|1|AB|U|2491
4V6S|1|AB|U|2492
4V6S|1|AB|U|2493
4V6S|1|AB|G|2494

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AO

50S ribosomal protein L16

Chain AY

50S ribosomal protein L27

Chain BC

Transfer RNA; tRNA