IL_4V6S_196
3D structure
- PDB id
- 4V6S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.1 Å
Loop
- Sequence
- CGUU*GACG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6S_196 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.3796
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
4V6S|1|AB|C|2815
4V6S|1|AB|G|2816
4V6S|1|AB|U|2817
4V6S|1|AB|U|2818
*
4V6S|1|AB|G|2828
4V6S|1|AB|A|2829
4V6S|1|AB|C|2830
4V6S|1|AB|G|2831
Current chains
- Chain AB
- 23S ribomosomal RNA
Nearby chains
- Chain A3
- 50S ribosomal protein L32
- Chain AE
- 50S ribosomal protein L3
- Chain AP
- 50S ribosomal protein L17
- Chain AU
- 50S ribosomal protein L22
Coloring options: