IL_4V6S_197

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

UGA*UCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_197 not in the Motif Atlas

Geometric match to IL_1Z7F_006

Geometric discrepancy: 0.247

The information below is about IL_1Z7F_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V6S|1|BA|U|137
4V6S|1|BA|G|138
4V6S|1|BA|A|139
*
4V6S|1|BA|U|224
4V6S|1|BA|C|225
4V6S|1|BA|G|226

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BR

30S ribosomal protein S16

Chain BV

30S ribosomal protein S20