IL_4V6S_205

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

4V6S|1|BA|A|1227

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_205 not in the Motif Atlas

Homologous match to IL_5J7L_042

Geometric discrepancy: 0.4605

The information below is about IL_5J7L_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V6S|1|BA|G|953
4V6S|1|BA|G|954
*
4V6S|1|BA|C|1226
4V6S|1|BA|A|1227
4V6S|1|BA|C|1228

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

Transfer RNA; tRNA

Chain BO

30S ribosomal protein S13

Chain BU

30S ribosomal protein S19