IL_4V6S_208

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CCG(4OC)CC*G(UR3)AACAAG

Length

14 nucleotides

Bulged bases

4V6S|1|BA|C|1400, 4V6S|1|BA|A|1503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6S|1|BA|C|1399
4V6S|1|BA|C|1400
4V6S|1|BA|G|1401
4V6S|1|BA|4OC|1402
4V6S|1|BA|C|1403
4V6S|1|BA|C|1404
*
4V6S|1|BA|G|1497
4V6S|1|BA|UR3|1498
4V6S|1|BA|A|1499
4V6S|1|BA|A|1500
4V6S|1|BA|C|1501
4V6S|1|BA|A|1502
4V6S|1|BA|A|1503
4V6S|1|BA|G|1504

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain BB

mRNA

Chain BC

Transfer RNA; tRNA

Chain BM

30S ribosomal protein S11