IL_4V6S_212

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4V6S|1|AB|C|995

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_212 not in the Motif Atlas

Homologous match to IL_7A0S_032

Geometric discrepancy: 0.448

The information below is about IL_7A0S_032

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

4V6S|1|AB|C|994
4V6S|1|AB|C|995
4V6S|1|AB|A|996
*
4V6S|1|AB|U|1159
4V6S|1|AB|G|1160

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L30

Chain AL

50S ribosomal protein L13

Chain AS

50S ribosomal protein L20

Chain AT

50S ribosomal protein L21