IL_4V6S_226

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CAUG*UGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_226 not in the Motif Atlas

Geometric match to IL_8CRE_433

Geometric discrepancy: 0.251

The information below is about IL_8CRE_433

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V6S|1|BA|C|1412
4V6S|1|BA|A|1413
4V6S|1|BA|U|1414
4V6S|1|BA|G|1415
*
4V6S|1|BA|U|1485
4V6S|1|BA|G|1486
4V6S|1|BA|G|1487
4V6S|1|BA|G|1488

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain BN

30S ribosomal protein S12