3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
CGGCUAAC*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6T_024 not in the Motif Atlas
Homologous match to IL_5J7L_024
Geometric discrepancy: 0.1075
The information below is about IL_5J7L_024
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

4V6T|1|AA|C|504
4V6T|1|AA|G|505
4V6T|1|AA|G|506
4V6T|1|AA|C|507
4V6T|1|AA|U|508
4V6T|1|AA|A|509
4V6T|1|AA|A|510
4V6T|1|AA|C|511
*
4V6T|1|AA|G|540
4V6T|1|AA|G|541

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AD
30S ribosomal protein S4
Chain AL
30S ribosomal protein S12

Coloring options:


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