IL_4V6T_056

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_056 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.165

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V6T|1|AA|G|1405
4V6T|1|AA|U|1406
4V6T|1|AA|C|1407
*
4V6T|1|AA|G|1494
4V6T|1|AA|U|1495
4V6T|1|AA|C|1496

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AY

elongation factor G

Chain BA

Large subunit ribosomal RNA; LSU rRNA