IL_4V6T_063

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

UGCGAAACC*GAUGUAGG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6T|1|AV|U|28
4V6T|1|AV|G|29
4V6T|1|AV|C|30
4V6T|1|AV|G|31
4V6T|1|AV|A|32
4V6T|1|AV|A|33
4V6T|1|AV|A|34
4V6T|1|AV|C|35
4V6T|1|AV|C|36
*
4V6T|1|AV|G|318
4V6T|1|AV|A|319
4V6T|1|AV|U|320
4V6T|1|AV|G|321
4V6T|1|AV|U|322
4V6T|1|AV|A|323
4V6T|1|AV|G|324
4V6T|1|AV|G|325

Current chains

Chain AV

full length transfer messenger RNA (tmRNA)

Nearby chains

Chain AS

30S ribosomal protein S19

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S ribosomal protein L5