IL_4V6T_076
3D structure
- PDB id
- 4V6T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.3 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6T_076 not in the Motif Atlas
- Homologous match to IL_5J7L_250
- Geometric discrepancy: 0.0605
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V6T|1|BA|G|188
4V6T|1|BA|G|189
4V6T|1|BA|A|190
4V6T|1|BA|A|191
4V6T|1|BA|C|192
4V6T|1|BA|U|193
4V6T|1|BA|G|194
*
4V6T|1|BA|C|201
4V6T|1|BA|U|202
4V6T|1|BA|A|203
4V6T|1|BA|A|204
4V6T|1|BA|G|205
4V6T|1|BA|U|206
4V6T|1|BA|A|207
4V6T|1|BA|C|208
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B2
- 50S ribosomal protein L34
- Chain B3
- 50S ribosomal protein L35
- Chain BL
- 50S ribosomal protein L15
- Chain BX
- 50S ribosomal protein L28
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