IL_4V6T_079

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_079 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2487

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V6T|1|BA|C|274
4V6T|1|BA|C|275
4V6T|1|BA|U|276
4V6T|1|BA|G|277
4V6T|1|BA|A|278
4V6T|1|BA|A|279
4V6T|1|BA|U|280
4V6T|1|BA|C|281
*
4V6T|1|BA|G|359
4V6T|1|BA|U|360
4V6T|1|BA|G|361
4V6T|1|BA|A|362
4V6T|1|BA|G|363

Current chains

Chain BA

23S ribosomal RNA

Nearby chains