IL_4V6T_113

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

4V6T|1|BA|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_113 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.074

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

4V6T|1|BA|G|1202
4V6T|1|BA|U|1203
4V6T|1|BA|A|1204
4V6T|1|BA|A|1205
4V6T|1|BA|G|1206
*
4V6T|1|BA|U|1240
4V6T|1|BA|A|1241
4V6T|1|BA|U|1242
4V6T|1|BA|C|1243

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15