IL_4V6T_126

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

UGUAGG*CUGAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_126 not in the Motif Atlas

Geometric match to IL_8ZA4_003

Geometric discrepancy: 0.3593

The information below is about IL_8ZA4_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35186.1

Basepair signature

cWW-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V6T|1|BA|U|1474
4V6T|1|BA|G|1475
4V6T|1|BA|U|1476
4V6T|1|BA|A|1477
4V6T|1|BA|G|1478
4V6T|1|BA|G|1479
*
4V6T|1|BA|C|1512
4V6T|1|BA|U|1513
4V6T|1|BA|G|1514
4V6T|1|BA|A|1515
4V6T|1|BA|G|1516
4V6T|1|BA|G|1517

Current chains

Chain BA

23S ribosomal RNA

Nearby chains