IL_4V6T_141
3D structure
- PDB id
- 4V6T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.3 Å
Loop
- Sequence
- UGC*GUAAA
- Length
- 8 nucleotides
- Bulged bases
- 4V6T|1|BA|A|1900
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6T_141 not in the Motif Atlas
- Geometric match to IL_4V9F_097
- Geometric discrepancy: 0.2512
- The information below is about IL_4V9F_097
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
4V6T|1|BA|U|1841
4V6T|1|BA|G|1842
4V6T|1|BA|C|1843
*
4V6T|1|BA|G|1897
4V6T|1|BA|U|1898
4V6T|1|BA|A|1899
4V6T|1|BA|A|1900
4V6T|1|BA|A|1901
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BC
- 50S ribosomal protein L2
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