IL_4V6T_158
3D structure
- PDB id
- 4V6T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.3 Å
Loop
- Sequence
- CGAG*CGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6T_158 not in the Motif Atlas
- Homologous match to IL_5J7L_333
- Geometric discrepancy: 0.0797
- The information below is about IL_5J7L_333
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
4V6T|1|BA|C|2350
4V6T|1|BA|G|2351
4V6T|1|BA|A|2352
4V6T|1|BA|G|2353
*
4V6T|1|BA|C|2364
4V6T|1|BA|G|2365
4V6T|1|BA|A|2366
4V6T|1|BA|G|2367
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B3
- 50S ribosomal protein L35
- Chain BW
- 50S ribosomal protein L27
Coloring options: