IL_4V6T_177

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_177 not in the Motif Atlas

Homologous match to IL_5J7L_351

Geometric discrepancy: 0.0901

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

4V6T|1|BA|C|2806
4V6T|1|BA|U|2807
4V6T|1|BA|G|2808
4V6T|1|BA|A|2809
4V6T|1|BA|A|2810
4V6T|1|BA|G|2811
*
4V6T|1|BA|C|2889
4V6T|1|BA|G|2890
4V6T|1|BA|U|2891
4V6T|1|BA|G|2892

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BS

50S ribosomal protein L22