IL_4V6T_196

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

4V6T|1|BA|U|846, 4V6T|1|BA|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_196 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.1135

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

4V6T|1|BA|A|844
4V6T|1|BA|A|845
4V6T|1|BA|U|846
4V6T|1|BA|U|847
4V6T|1|BA|C|848
*
4V6T|1|BA|G|930
4V6T|1|BA|U|931
4V6T|1|BA|U|932
4V6T|1|BA|A|933
4V6T|1|BA|U|934

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BZ

50S ribosomal protein L30