IL_4V6T_216

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

UGGAA*UGAAG

Length

10 nucleotides

Bulged bases

4V6T|1|AV|G|204, 4V6T|1|AV|G|205, 4V6T|1|AV|A|206, 4V6T|1|AV|G|223, 4V6T|1|AV|A|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6T|1|AV|U|203
4V6T|1|AV|G|204
4V6T|1|AV|G|205
4V6T|1|AV|A|206
4V6T|1|AV|A|207
*
4V6T|1|AV|U|222
4V6T|1|AV|G|223
4V6T|1|AV|A|224
4V6T|1|AV|A|225
4V6T|1|AV|G|226

Current chains

Chain AV

full length transfer messenger RNA (tmRNA)

Nearby chains