IL_4V6T_225

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V6T|1|BA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_225 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.421

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V6T|1|BA|C|2129
4V6T|1|BA|U|2130
4V6T|1|BA|U|2131
4V6T|1|BA|U|2132
4V6T|1|BA|G|2133
4V6T|1|BA|A|2134
4V6T|1|BA|A|2135
4V6T|1|BA|G|2136
*
4V6T|1|BA|U|2155
4V6T|1|BA|G|2156
4V6T|1|BA|G|2157
4V6T|1|BA|A|2158
4V6T|1|BA|G|2159

Current chains

Chain BA

23S ribosomal RNA

Nearby chains