3D structure

PDB id
4V6V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracycline resistance protein Tet(O) bound to the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
9.8 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6V_039 not in the Motif Atlas
Homologous match to IL_5J7L_037
Geometric discrepancy: 0.1523
The information below is about IL_5J7L_037
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

4V6V|1|AA|C|779
4V6V|1|AA|A|780
4V6V|1|AA|A|781
4V6V|1|AA|A|782
4V6V|1|AA|C|783
*
4V6V|1|AA|G|799
4V6V|1|AA|G|800
4V6V|1|AA|U|801
4V6V|1|AA|A|802
4V6V|1|AA|G|803

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AK
30S ribosomal protein S11
Chain AU
30S ribosomal protein S21
Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.7684 s