IL_4V6V_058

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_058 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2983

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6V|1|AA|C|1303
4V6V|1|AA|G|1304
4V6V|1|AA|G|1305
4V6V|1|AA|A|1306
4V6V|1|AA|U|1307
4V6V|1|AA|U|1308
*
4V6V|1|AA|A|1329
4V6V|1|AA|U|1330
4V6V|1|AA|G|1331
4V6V|1|AA|A|1332
4V6V|1|AA|A|1333
4V6V|1|AA|G|1334

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S ribosomal protein S13

Chain AS

30S ribosomal protein S19