3D structure

PDB id
4V6V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracycline resistance protein Tet(O) bound to the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
9.8 Å

Loop

Sequence
GCACU*AAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6V_093 not in the Motif Atlas
Homologous match to IL_4WF9_033
Geometric discrepancy: 0.1351
The information below is about IL_4WF9_033
Detailed Annotation
C-loop with bulged stacked A's
Broad Annotation
C-loop
Motif group
IL_26222.2
Basepair signature
cWW-cWS-cSH-tWH-R-L-R-cWW
Number of instances in this motif group
6

Unit IDs

4V6V|1|BA|G|864
4V6V|1|BA|C|865
4V6V|1|BA|A|866
4V6V|1|BA|C|867
4V6V|1|BA|U|868
*
4V6V|1|BA|A|909
4V6V|1|BA|A|910
4V6V|1|BA|A|911
4V6V|1|BA|C|912

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BQ
50S ribosomal protein L16
Chain Ba
5S ribosomal RNA; 5S rRNA

Coloring options:


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