IL_4V6V_098

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4V6V|1|BA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_098 not in the Motif Atlas

Homologous match to IL_7A0S_032

Geometric discrepancy: 0.2623

The information below is about IL_7A0S_032

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

4V6V|1|BA|C|994
4V6V|1|BA|C|995
4V6V|1|BA|A|996
*
4V6V|1|BA|U|1159
4V6V|1|BA|G|1160

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L30

Chain BN

50S ribosomal protein L13

Chain BU

50S ribosomal protein L20

Chain BV

50S ribosomal protein L21