IL_4V6V_102

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_102 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.2132

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4V6V|1|BA|U|1018
4V6V|1|BA|U|1019
4V6V|1|BA|A|1020
4V6V|1|BA|A|1021
4V6V|1|BA|G|1022
4V6V|1|BA|U|1023
4V6V|1|BA|G|1024
*
4V6V|1|BA|C|1140
4V6V|1|BA|U|1141
4V6V|1|BA|A|1142
4V6V|1|BA|A|1143
4V6V|1|BA|A|1144

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BN

50S ribosomal protein L13