IL_4V6V_109

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4V6V|1|BA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_109 not in the Motif Atlas

Homologous match to IL_7RQB_045

Geometric discrepancy: 0.1356

The information below is about IL_7RQB_045

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V6V|1|BA|C|1196
4V6V|1|BA|G|1197
4V6V|1|BA|U|1198
*
4V6V|1|BA|A|1247
4V6V|1|BA|G|1248
4V6V|1|BA|U|1249
4V6V|1|BA|G|1250

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BP

50S ribosomal protein L15

Chain BU

50S ribosomal protein L20