IL_4V6V_127

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GAA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_127 not in the Motif Atlas

Homologous match to IL_4WF9_063

Geometric discrepancy: 0.1751

The information below is about IL_4WF9_063

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_10432.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

10

Unit IDs

4V6V|1|BA|G|1663
4V6V|1|BA|A|1664
4V6V|1|BA|A|1665
*
4V6V|1|BA|U|1995
4V6V|1|BA|C|1996
4V6V|1|BA|C|1997

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BO

50S ribosomal protein L14

Chain BT

50S ribosomal protein L19