3D structure

PDB id
4V6V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracycline resistance protein Tet(O) bound to the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
9.8 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
4V6V|1|BA|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6V_130 not in the Motif Atlas
Geometric match to IL_4V9F_063
Geometric discrepancy: 0.1246
The information below is about IL_4V9F_063
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_47346.2
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

4V6V|1|BA|C|1686
4V6V|1|BA|G|1687
4V6V|1|BA|U|1688
4V6V|1|BA|A|1689
4V6V|1|BA|A|1690
4V6V|1|BA|C|1691
*
4V6V|1|BA|G|1696
4V6V|1|BA|G|1697
4V6V|1|BA|A|1698
4V6V|1|BA|G|1699
4V6V|1|BA|A|1700
4V6V|1|BA|A|1701
4V6V|1|BA|G|1702

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain BD
50S ribosomal protein L2

Coloring options:


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