IL_4V6V_136

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

4V6V|1|BA|C|1838, 4V6V|1|BA|G|1839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_136 not in the Motif Atlas

Homologous match to IL_4WF9_070

Geometric discrepancy: 0.5409

The information below is about IL_4WF9_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6V|1|BA|C|1837
4V6V|1|BA|C|1838
4V6V|1|BA|G|1839
4V6V|1|BA|G|1840
*
4V6V|1|BA|C|1902
4V6V|1|BA|G|1903

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2