IL_4V6V_143

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

4V6V|1|BA|C|2055, 4V6V|1|BA|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_143 not in the Motif Atlas

Geometric match to IL_5TBW_092

Geometric discrepancy: 0.2487

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V6V|1|BA|A|2054
4V6V|1|BA|C|2055
4V6V|1|BA|G|2056
*
4V6V|1|BA|C|2612
4V6V|1|BA|U|2613
4V6V|1|BA|A|2614
4V6V|1|BA|U|2615

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BW

50S ribosomal protein L22