IL_4V6V_153

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

4V6V|1|BA|U|2203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_153 not in the Motif Atlas

Homologous match to IL_5J7L_331

Geometric discrepancy: 0.3098

The information below is about IL_5J7L_331

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V6V|1|BA|U|2202
4V6V|1|BA|U|2203
4V6V|1|BA|G|2204
*
4V6V|1|BA|U|2220
4V6V|1|BA|G|2221

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BD

50S ribosomal protein L2

Chain BL

50S ribosomal protein L9