IL_4V6V_173

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UGC*GCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGC,GCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_173 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.184

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V6V|1|BA|U|2743
4V6V|1|BA|G|2744
4V6V|1|BA|C|2745
*
4V6V|1|BA|G|2759
4V6V|1|BA|C|2760
4V6V|1|BA|A|2761

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6