IL_4V6V_178

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_178 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1501

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

4V6V|1|Ba|C|4
4V6V|1|Ba|G|6
*
4V6V|1|Ba|C|114
4V6V|1|Ba|A|115
4V6V|1|Ba|G|116

Current chains

Chain Ba

5S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L18