IL_4V6V_184
3D structure
- PDB id
- 4V6V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Tetracycline resistance protein Tet(O) bound to the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6V_184 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1158
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V6V|1|Ba|C|71
4V6V|1|Ba|G|72
4V6V|1|Ba|A|73
4V6V|1|Ba|U|74
4V6V|1|Ba|G|75
4V6V|1|Ba|G|76
4V6V|1|Ba|U|77
4V6V|1|Ba|A|78
4V6V|1|Ba|G|79
*
4V6V|1|Ba|C|97
4V6V|1|Ba|G|98
4V6V|1|Ba|A|99
4V6V|1|Ba|G|100
4V6V|1|Ba|A|101
4V6V|1|Ba|G|102
4V6V|1|Ba|U|103
4V6V|1|Ba|A|104
4V6V|1|Ba|G|105
Current chains
- Chain Ba
- 5S ribosomal RNA
Nearby chains
- Chain B3
- 50S ribosomal protein L30
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S ribosomal protein L16
- Chain BZ
- 50S ribosomal protein L25
Coloring options: