IL_4V6V_188

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GU(5MC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_188 not in the Motif Atlas

Homologous match to IL_4LFB_069

Geometric discrepancy: 0.1914

The information below is about IL_4LFB_069

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V6V|1|AA|G|1405
4V6V|1|AA|U|1406
4V6V|1|AA|5MC|1407
*
4V6V|1|AA|G|1494
4V6V|1|AA|U|1495
4V6V|1|AA|C|1496

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain A1

Tetracycline resistance protein TetO

Chain A2

mRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA