IL_4V6V_203

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

4V6V|1|BA|G|2867

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_203 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.213

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

4V6V|1|BA|U|2847
4V6V|1|BA|G|2848
4V6V|1|BA|U|2849
4V6V|1|BA|A|2850
4V6V|1|BA|A|2851
4V6V|1|BA|G|2852
*
4V6V|1|BA|U|2865
4V6V|1|BA|U|2866
4V6V|1|BA|G|2867
4V6V|1|BA|A|2868
4V6V|1|BA|G|2869

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L17

Chain BT

50S ribosomal protein L19