IL_4V6X_002

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

4V6X|1|A5|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_002 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.159

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V6X|1|A5|A|12
4V6X|1|A5|U|13
4V6X|1|A5|C|14
*
4V6X|1|A8|G|143
4V6X|1|A8|U|144

Current chains

Chain A5

28S ribosomal RNA

Chain A8

5.8S ribosomal RNA

Nearby chains

Chain CG

60S ribosomal protein L7a

Chain CN

60S ribosomal protein L15

Chain CX

60S ribosomal protein L23a